Articles
Immunarch v0.9
- Limit the number of threads used by immunarch
- Introduction to `immunarch`
- Data loading
- Single-cell and paired chain data: scTCRseq and scBCRseq exploration
- Basic analysis and clonality
- Loading MiXCR Data
- Loading 10x Genomics Data
- Repertoire overlap and public clonotypes
- Gene usage analysis
- Diversity estimation
- Make your plots publication-ready with fixVis
- Tracking clonotypes across time points in `immunarch`
- Kmer and sequence motif analysis and visualisation
- Annotate clonotypes using immune receptor databases
- Data Filtering
- Analysis of biophysicochemical properties of CDR3 sequences
- BCR
- Clustering