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immunarch 0.10.3

Immunarch v1.0
Migration Guide
- Installation & troubleshooting
- First steps
- Data loading
- How-to: Loading MiXCR Data
- How-to: Loading 10x Genomics Data
- How-to: Single-cell and paired chain data
- Basic statistics and clonality
- Data filtering
- Repertoire-level exploration and comparison
- Repertoire overlap and public clonotypes
- Gene usage
- Diversity estimation
- Clonotype-level exploration and comparison
- Track clonotypes across samples and time
- Annotate clonotypes using immune receptor databases
- Kmer and sequence motif analysis and visualisation
- Preparing to publication
- Make your plots publication-ready with fixVis
- BCR analysis
- BCR pipeline
- Clustering
Reference

Analysis of biophysicochemical properties of CDR3 sequences

ImmunoMind – improving design of T-cell therapies using multi-omics and AI. Research and biopharma partnerships, more details: immunomind.io

support@immunomind.io

Source: vignettes/web_only_v0/v10_prop.Rmd

v10_prop.Rmd

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