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immunarch
1.0.0
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Installation & troubleshooting
First steps
Data loading
How-to: Loading MiXCR Data
How-to: Loading 10x Genomics Data
How-to: Single-cell and paired chain data
Basic statistics and clonality
Data filtering
Repertoire-level exploration and comparison
Repertoire overlap and public clonotypes
Gene usage
Diversity estimation
Clonotype-level exploration and comparison
Track clonotypes across samples and time
Annotate clonotypes using immune receptor databases
Kmer and sequence motif analysis and visualisation
Preparing to publication
Make your plots publication-ready with fixVis
BCR analysis
BCR pipeline
Clustering
Reference
COVID-19
ImmunoMind
Tables with amino acid properties
Source:
R/data_docs.R
aa_properties.Rd
Tables with amino acid properties
Contents