Toggle navigation
immunarch
1.0.0
Start Here
Installation & troubleshooting
First steps
Data loading
How-to: Loading MiXCR Data
How-to: Loading 10x Genomics Data
How-to: Single-cell and paired chain data
Basic statistics and clonality
Data filtering
Repertoire-level exploration and comparison
Repertoire overlap and public clonotypes
Gene usage
Diversity estimation
Clonotype-level exploration and comparison
Track clonotypes across samples and time
Annotate clonotypes using immune receptor databases
Kmer and sequence motif analysis and visualisation
Preparing to publication
Make your plots publication-ready with fixVis
BCR analysis
BCR pipeline
Clustering
Reference
COVID-19
ImmunoMind
Articles
All tutorials
Introduction to `immunarch`
Data loading
Single-cell and paired chain data: scTCRseq and scBCRseq exploration
Basic analysis and clonality
Loading MiXCR Data
Loading 10x Genomics Data
Repertoire overlap and public clonotypes
Gene usage analysis
Diversity estimation
Make your plots publication-ready with fixVis
Tracking clonotypes across time points in `immunarch`
Kmer and sequence motif analysis and visualisation
Annotate clonotypes using immune receptor databases
ImmunoMinds Community
Data Filtering
Analysis of biophysicochemical properties of CDR3 sequences
BCR
Clustering