Graph clustering based on distances between sequences
seqCluster(.data, .dist, .perc_similarity, .nt_similarity, .fixed_threshold)
Every object must have columns in the immunarch compatible format immunarch_data_format
List of distance objects produced with seqDist function.
Numeric value between 0 and 1 specifying the maximum acceptable weight of an edge in a graph. This threshold depends on the length of sequences.
Numeric between 0-sequence length specifying the threshold of allowing a 1 in n nucleotides mismatch in sequencies.
Numeric specifying the threshold on the maximum weight of an edge in a graph.
Immdata data format object. Same as .data, but with extra 'Cluster' column with clusters assigned.