Make your plots publication-ready with fixVis

ImmunoMind – improving design of T-cell therapies using multi-omics and AI. Research and biopharma partnerships, more details: immunomind.io

Source: vignettes/web_only/v7_fixvis.Rmd

In order to make the visualization process easier, we developed a Shiny-based tool called FixVis. The FixVis is distributed with immunarch package. To run FixVis just apply it to any ggplot2-based plot, including those from the immunarch’s vis function. It works perfectly for every plot. FixVis could work only with one plot at a time.

Here is an example of how to run FixVis with vis function from immunarch. First, the plot is generated by vis function from immunarch and then FixVis is applied:

data(immdata)
gu = geneUsage(immdata$data)
p = vis(gu)
fixVis(p)

If you want to test it, run fixVis with no arguments; it will use the diamonds data for visualisation:

For convenience we published a FixVis instances that are available online here. Also a FixVis instance for quick overview is embedded in the cell below:

knitr::include_app("https://immunomind.shinyapps.io/fixvis/", height = "800px")