Output from every function in immunarch can be visualised with a
single function -
vis automatically detects
the type of the data and draws a proper visualisation. For example, output
repOverlap function will be identified as repertoire overlap values
and respective visualisation will be chosen without any additional arguments.
See "Details" for the list of available visualisations.
Pass the output from any immunarch analysis tool to
Any other arguments, see the "Details" section for specific visualisation functions.
A ggplot2, pheatmap or circlize object.
List of available visualisations for different kinds of data.
Overlaps and public clonotypes:
- Mutation networks (from mutationNetwork) - Work In Progress on vis.immunr_mutation_network;
- CDR3 amino acid properties, e.g., biophysical (from cdrProp) - Work In Progress on vis.immunr_cdr_prop.
Additionaly, we provide a wrapper functions for visualisations of common data types:
- Any data frames or matrices using circos plots - see vis_circos.
fixVis for precise manipulation of plots.